P. patens Gene Model Lookup DB

The P. patens Gene Model Lookup Database provide tools to convert between P. patens gene model versions, to extract CDS, cDNA and protein sequences from a gene or list of genes, and to find genes by name or keywords from their annotations. Genes are linked to genome browsers and annotations from multiple databases such as NCBI, SwissProt, Ensembl, Phytozome, CoGe, PLAZA and TAIR. Additionally, sequence files and annotations can be downloaded for the whole genome and the whole set of genes.

Multiple gene model versions has been developed over the last ten years for P. patens. Here we provide a tool to lookup gene versions automatically for multiple genes. Click on the picture on the right to visualize P. patens gene model nomenclature.