GenomeZoo/MAdLandDB

• GenomeZoo GitHub repository ( releases and changelog )

Anthoceros/

A_agrestis_Bonn/

• AagrBONN_genome.fasta.gz
• AagrBONN_genome.gff.gz
• Aagrestis_BONN_CDS.fasta.gz
• Aagrestis_BONN_PROT.fasta.gz
• Aagrestis_BONN_cDNA.fasta.gz

A_agrestis_Oxford/

• AagrOXF_genome.fasta.gz
• AagrOXF_genome.gff.gz
• AagrOXF_genome_CDS.fasta.gz
• AagrOXF_genome_PROT.fasta.gz
• AagrOXF_genome_cDNA.fasta.gz

A_punctatus/

• Apunct_genome.fasta.gz
• Apunct_genome.gff.gz
• Apunct_genome_CDS.fasta.gz
• Apunct_genome_PROT.fasta.gz
• Apunct_genome_cDNA.fasta.gz

Ceratodon purpureus/

C.purpureus_GG1_v1.1/

• CpurpureusGG1_539_v1.1.DataReleasePolicy.html
• CpurpureusGG1_539_v1.1.readme.txt
• annotation
• assembly

C.purpureus_R40_v1.1/

• CpurpureusR40_538_v1.1.DataReleasePolicy.html
• CpurpureusR40_538_v1.1.readme.txt
• annotation
• assembly

Chara braunii/

• Cbraunii_v1_cds.fasta.gz
• Cbraunii_v1_genome.fasta.gz
• Cbraunii_v1_pep.fasta.gz

Orcae_data/

• Chbra_embl_LATEST.tar.gz
• Chbra_gene_info_LATEST.txt.gz
• Chbra_gff3_LATEST.tar.gz
• Chbra_gff_LATEST.tar.gz
• Chbra_gtf_LATEST.tar.gz
• Quality_assessment_predicted_genes_Chare_braunii__mmc4.csv
• Quality_assessment_predicted_genes_Chare_braunii__mmc4.xlsx.gz
• chara_transcripts_6350.fasta.gz
• chbra_iso_noTE_23546_pep.fasta.gz
• correspondence.txt.gz
• mRNA_Chbra_active_cds_20170414.tfa.gz
• mRNA_Chbra_active_pep_20170414.tfa.gz
• mRNA_chbra_isoformsInc_cds_20190905.tfa.gz
• mRNA_chbra_isoformsInc_noTE_cds_20190905.tfa.gz
• mRNA_chbra_isoformsInc_noTE_pep_20190905.tfa.gz
• mRNA_chbra_isoformsInc_pep_20190905.tfa.gz
• putative_TE.list.gz

Physcomitrium patens/

Annotations/

• P.patens_lookup_table_20181029.xlsx
• P.patens_lookup_table_20230906.xlsx
• P.patens_v1.2
• P.patens_v1.6
• P.patens_v3.3
• P.patens_v6
• P.patens_v7

Genome sequences/

• P.patens_v3
• P.patens_v6
• P.patens_v7

bam-files/

• ChIP-Seq_peaks.zip
• GamControl_H3_Chromosomes_unique.bam
• GamControl_Input_Chromosomes_unique.bam
• GamControl_K27Ac_Chromosomes_unique.bam
• GamControl_K27me3_Chromosomes_unique.bam
• GamControl_K4me3_Chromosomes_unique.bam
• GamControl_K9Ac_Chromosomes_unique.bam
• GamControl_K9me2_Chromosomes_unique.bam
• GamControl_Mock_Chromosomes_unique.bam
• GamControl_combined_control.sam
• GamDrought_Input_Chromosomes_unique.bam
• GamDrought_K27Ac_Chromosomes_unique.bam
• GamDrought_K27me3_chromosomes_unique.bam
• GamDrought_K4me3_chromosomes_unique.bam
• GamDrought_K9Ac_Chromosomes_unique.bam
• GamDrought_K9me2_Chromosomes_unique.bam
• GamDrought_Mock_Chromosomes_unique.bam
• GamDrought_combined_control.bed
• Protonema_H3_chromosomes_unique.bam
• Protonema_Input_Chromosomes_unique.bam
• Protonema_K27Ac_Chromosomes_unique.bam
• Protonema_K27me3_chromosomes_unique.bam
• Protonema_K4me3_chromosomes_unique.bam
• Protonema_K9Ac_Chromosomes_unique.bam
• Protonema_K9me2_Chromosomes_unique.bam
• Protonema_Mock_chromosomes_unique.bam
• Protonema_combined_control.bed
• README.md

Spirogyra pratensis/

Annotations/

• Spirogyra_pratensis_v1.gff.gz

Sequences/

• Sp_v1_cdna.fasta.gz
• Sp_v1_cds.fasta.gz
• Sp_v1_pep.fasta.gz
• Spirogyra_pratensis_genome.jgi.fasta.gz