Other resources

• PEATmoss - The Physcomitrium Expression Atlas Tool.
• TAPscan - Transcription Associated Proteins of P. patens.
• GTP and ATP2 - Targeting Prediction Tools.
• P. patens in Phytozome
• P. patens V3 genome browser in Phytozome
• P. patens in CoGe
• P. patens V3 genome browser in CoGe
• P. patens in Ensembl Plants
• P. patens in PLAZA
• Physcobase
• P. patens genome at JGI
• P. patens genome at NCBI
• g:Profiler - GO enrichment and other tools for P. patens and many other species.

Publications of interest

• Fernandez-Pozo N, Haas FB, Meyberg R, Ullrich KK, Hiss M, Perroud PF, Hanke S, Kratz V, Powell A, Vesty EF, Coates JC, Mueller LA, Rensing, SA. (2019)
  PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.
  The Plant Journal. https://doi.org/10.1111/tpj.14607
• Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates J, Fujita T, ..., Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA (2018)
  The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data.
  Plant J. 95(1):168
• Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, ..., Reski R, Cuming AC, Tuskan J, Maumus F, Salse J, Schmutz J and Rensing SA (2017)
  The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution
  Plant J. 93(3):515
• Hiss M, Meyberg R, Westermann J, Haas FB, Schneider L, Schallenberg-Rüdinger M, Ullrich KK, Rensing SA (2017)
  Sexual reproduction, sporophyte development and molecular variation in the model moss Physcomitrella patens: introducing the ecotype Reute.
  Plant J. 90:606
• Possart A, Xu T, Paik I, Hanke S, Keim S, Hermann HM, Wolf L, Hiß M, Becker C, Huq E, Rensing SA, Hiltbrunner A (2017)
  Characterization of Phytochrome Interacting Factors from the Moss Physcomitrella patens Illustrates Conservation of Phytochrome Signaling Modules in Land Plants.
  Plant Cell. 29(2):310-330.
• Ortiz-Ramirez C, Hernandez-Coronado M, Thamm A, Catarino B, Wang M, Dolan L, Feijo JA, Becker JD (2016)
  A Transcriptome Atlas of Physcomitrella patens Provides Insights into the Evolution and Development of Land Plants.
  Molecular Plant 9(2):205-220
• Beike AK, Lang D, Zimmer AD, Wüst F, Trautmann D, Wiedemann G, Beyer P, Decker EL, Reski R. (2015)
  Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation.
  New Phytologist. 205(2):869-881
• Hiss M, Laule O, Meskauskiene RM, Arif MA, Decker EL, Erxleben A, Frank W, Hanke ST, Lang D, Martin A, Neu C, Reski R, Richardt S, Schallenberg-Rüdinger M, Szövényi P, Tiko T, Wiedemann G, Wolf L, Zimmermann P, Rensing SA (2014)
  Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions.
  Plant J. 79:530
• Zimmer AD, Lang D, Buchta K, Rombauts S, Nishiyama T, Hasebe M, Van de Peer Y, Rensing SA, Reski R (2013)
  Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions.
  BMC Genomics 14:498
• Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist E, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, ..., Reski R, Grigoriev IV, Quatrano RS, Boore JL (2008)
  The genome of the moss Physcomitrella patens reveals evolutionary insights into the conquest of land by plants.
  Science 319:64-69
• Busch H, Boerries M, Bao J, Hanke ST, Tiko T, Hiss M, Rensing SA (2013)
  Network Theory Inspired Analysis of Time-Resolved Expression Data Reveals Key Players Guiding P. patens Stem Cell Development.
  PLoS ONE 8(4):e60494